About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3176.13231
mRNA.BJAM.scaffold3177.13232RIBOSOMAL S SUBUNIT
mRNA.BJAM.scaffold3177.13233CXC DOMAIN-CONTAINING PROTEIN-RELATED
mRNA.BJAM.scaffold3178.13234
mRNA.BJAM.scaffold318.2393
mRNA.BJAM.scaffold318.2394
mRNA.BJAM.scaffold318.2395
mRNA.BJAM.scaffold318.2396FI19922P1-RELATED
mRNA.BJAM.scaffold318.2397ACYL CARRIER PROTEIN
mRNA.BJAM.scaffold318.2398RFWD3 PROTEIN
mRNA.BJAM.scaffold318.2399SODIUM/CHLORIDE DEPENDENT TRANSPORTER
mRNA.BJAM.scaffold318.2400SODIUM/CHLORIDE DEPENDENT TRANSPORTER
mRNA.BJAM.scaffold318.2401
mRNA.BJAM.scaffold318.2402RNA AND EXPORT FACTOR BINDING PROTEIN
mRNA.BJAM.scaffold318.2403ACTIN
mRNA.BJAM.scaffold318.2404ACTIN
mRNA.BJAM.scaffold318.2405ACTIN
mRNA.BJAM.scaffold318.2406ACTIN
mRNA.BJAM.scaffold318.2407ACTIN
mRNA.BJAM.scaffold318.2408ACTIN
mRNA.BJAM.scaffold318.2409ACTIN
mRNA.BJAM.scaffold318.2410ACTIN
mRNA.BJAM.scaffold318.2411ACTIN
mRNA.BJAM.scaffold318.2412ACTIN
mRNA.BJAM.scaffold318.2413ACTIN
mRNA.BJAM.scaffold318.2414ACTIN
mRNA.BJAM.scaffold318.2415ACTIN
mRNA.BJAM.scaffold318.2416ACTIN
mRNA.BJAM.scaffold318.2417ACTIN
mRNA.BJAM.scaffold318.2418ACTIN
mRNA.BJAM.scaffold318.2419CYTOSOLIC REGULATOR PIANISSIMO
mRNA.BJAM.scaffold3181.13235ARMADILLO SEGMENT POLARITY PROTEIN
mRNA.BJAM.scaffold3181.13236CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA
mRNA.BJAM.scaffold3181.13237ATP-DEPENDENT RNA HELICASE
mRNA.BJAM.scaffold3181.13238RNA POLYMERASE II-ASSOCIATED PROTEIN 1
mRNA.BJAM.scaffold3181.13239SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
mRNA.BJAM.scaffold3181.13240SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
mRNA.BJAM.scaffold3181.13241MRNA GUANINE-7- METHYLTRANSFERASE
mRNA.BJAM.scaffold3181.13242
mRNA.BJAM.scaffold3183.13243UNCHARACTERIZED
mRNA.BJAM.scaffold3183.13244
mRNA.BJAM.scaffold3184.13245
mRNA.BJAM.scaffold3184.132464-NITROPHENYLPHOSPHATASE-RELATED
mRNA.BJAM.scaffold3185.13247
mRNA.BJAM.scaffold3185.13248RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
mRNA.BJAM.scaffold3186.13249V-TYPE PROTON ATPASE SUBUNIT H
mRNA.BJAM.scaffold3186.13250
mRNA.BJAM.scaffold3186.13251NUDIX HYDROLASE
mRNA.BJAM.scaffold3186.13252TYROSINE-PROTEIN KINASE RECEPTOR
mRNA.BJAM.scaffold3186.13253SUSHI DOMAIN-CONTAINING PROTEIN 1
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