About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3125.13136POLYCYSTIN FAMILY MEMBER
mRNA.BJAM.scaffold3125.13137AAA-FAMILY ATPASE
mRNA.BJAM.scaffold3125.13138ANOCTAMIN
mRNA.BJAM.scaffold3125.13139
mRNA.BJAM.scaffold3125.13140
mRNA.BJAM.scaffold3125.13141KINASE D-INTERACTING SUBSTRATE OF 220 KDA
mRNA.BJAM.scaffold3125.13142KINASE D-INTERACTING SUBSTRATE OF 220 KDA
mRNA.BJAM.scaffold3125.13143
mRNA.BJAM.scaffold3127.13144
mRNA.BJAM.scaffold3128.13145
mRNA.BJAM.scaffold3128.13146
mRNA.BJAM.scaffold313.2335DNAJ HOMOLOG SUBFAMILY C MEMBER 9
mRNA.BJAM.scaffold313.2336MITOGEN-ACTIVATED PROTEIN KINASE
mRNA.BJAM.scaffold313.2337SECRETED MODULAR CALCIUM-BINDING PROTEIN
mRNA.BJAM.scaffold313.2338SECRETED MODULAR CALCIUM-BINDING PROTEIN
mRNA.BJAM.scaffold313.2339RNA HELICASE
mRNA.BJAM.scaffold313.2340
mRNA.BJAM.scaffold313.2341
mRNA.BJAM.scaffold313.2342
mRNA.BJAM.scaffold3130.13148E3 UBIQUITIN-PROTEIN LIGASE TM129
mRNA.BJAM.scaffold3130.13149
mRNA.BJAM.scaffold3130.13150UNCHARACTERIZED
mRNA.BJAM.scaffold3130.13151CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
mRNA.BJAM.scaffold3130.13152DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED
mRNA.BJAM.scaffold3131.13153UNCHARACTERIZED
mRNA.BJAM.scaffold3131.13154UNCHARACTERIZED
mRNA.BJAM.scaffold3131.13155
mRNA.BJAM.scaffold3131.13156
mRNA.BJAM.scaffold3131.13157STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
mRNA.BJAM.scaffold3131.13158
mRNA.BJAM.scaffold3131.13159
mRNA.BJAM.scaffold3132.13160DEOXYRIBONUCLEASE
mRNA.BJAM.scaffold3132.13161DEOXYRIBONUCLEASE
mRNA.BJAM.scaffold3132.13162DEOXYRIBONUCLEASE
mRNA.BJAM.scaffold3132.13163DEOXYRIBONUCLEASE
mRNA.BJAM.scaffold3132.13164FUKUTIN RELATED PROTEIN
mRNA.BJAM.scaffold3136.13165
mRNA.BJAM.scaffold3138.13166UNCHARACTERIZED
mRNA.BJAM.scaffold3138.13167UNCHARACTERIZED
mRNA.BJAM.scaffold3138.13168MUSCLEBLIND-LIKE PROTEIN
mRNA.BJAM.scaffold314.2343
mRNA.BJAM.scaffold314.2344BETA-GALACTOSIDASE RELATED
mRNA.BJAM.scaffold314.2345NADPH OXIDASE
mRNA.BJAM.scaffold314.2346NADPH OXIDASE
mRNA.BJAM.scaffold314.2347PROTEIN SIDEKICK
mRNA.BJAM.scaffold314.2348TITIN
mRNA.BJAM.scaffold314.2349BASIGIN RELATED
mRNA.BJAM.scaffold314.2350
mRNA.BJAM.scaffold314.2351DYNEIN HEAVY CHAIN
mRNA.BJAM.scaffold314.2352DYNEIN HEAVY CHAIN
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