About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold314.2353DYNEIN HEAVY CHAIN
mRNA.BJAM.scaffold314.2354DYNEIN HEAVY CHAIN FAMILY PROTEIN
mRNA.BJAM.scaffold314.2355MALE FERTILITY FACTOR KL5
mRNA.BJAM.scaffold314.2356
mRNA.BJAM.scaffold3140.13169
mRNA.BJAM.scaffold3140.13170SORTING NEXIN
mRNA.BJAM.scaffold3140.13171
mRNA.BJAM.scaffold3140.1317228S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL
mRNA.BJAM.scaffold3140.13173DOPAMINE BETA HYDROXYLASE RELATED
mRNA.BJAM.scaffold3142.1317440S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11
mRNA.BJAM.scaffold3142.13175LIPASE
mRNA.BJAM.scaffold3143.13176
mRNA.BJAM.scaffold3143.13177
mRNA.BJAM.scaffold3144.13178
mRNA.BJAM.scaffold3144.13179PER1-RELATED
mRNA.BJAM.scaffold3144.13180DNAJ HOMOLOG SUBFAMILY C MEMBER 17
mRNA.BJAM.scaffold3146.13181SCY1-RELATED S/T PROTEIN KINASE-LIKE
mRNA.BJAM.scaffold3146.13182SCY1-RELATED S/T PROTEIN KINASE-LIKE
mRNA.BJAM.scaffold3146.13183SCY1-RELATED S/T PROTEIN KINASE-LIKE
mRNA.BJAM.scaffold3146.13184SCY1-RELATED S/T PROTEIN KINASE-LIKE
mRNA.BJAM.scaffold3147.13185UNCHARACTERIZED
mRNA.BJAM.scaffold3147.13186SERINE/THREONINE PROTEIN PHOSPHATASE
mRNA.BJAM.scaffold3147.13187OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold3148.13188
mRNA.BJAM.scaffold3148.13189
mRNA.BJAM.scaffold315.2357
mRNA.BJAM.scaffold315.2358
mRNA.BJAM.scaffold315.2359CXC DOMAIN-CONTAINING PROTEIN-RELATED
mRNA.BJAM.scaffold315.2360
mRNA.BJAM.scaffold315.2361MYOSIN
mRNA.BJAM.scaffold315.2362ANNEXIN
mRNA.BJAM.scaffold315.2363MYOSIN REGULATORY LIGHT CHAIN 2
mRNA.BJAM.scaffold315.2364COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17
mRNA.BJAM.scaffold315.2365FI21225P1
mRNA.BJAM.scaffold315.2366FI21225P1
mRNA.BJAM.scaffold315.2367FI21225P1
mRNA.BJAM.scaffold315.2368FI21225P1
mRNA.BJAM.scaffold315.2369PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE
mRNA.BJAM.scaffold315.2370
mRNA.BJAM.scaffold315.2371PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
mRNA.BJAM.scaffold315.2372
mRNA.BJAM.scaffold315.2373DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2
mRNA.BJAM.scaffold3151.13190
mRNA.BJAM.scaffold3151.13191CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
mRNA.BJAM.scaffold3154.13192TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED
mRNA.BJAM.scaffold3154.13193ZINC FINGER PROTEIN
mRNA.BJAM.scaffold3155.13194
mRNA.BJAM.scaffold3156.13195
mRNA.BJAM.scaffold3156.13196ATP-BINDING CASSETTE SUB-FAMILY C
mRNA.BJAM.scaffold3156.13197
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