About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3261.13427
mRNA.BJAM.scaffold3262.13428
mRNA.BJAM.scaffold3262.13429EXOSOME COMPLEX COMPONENT
mRNA.BJAM.scaffold3262.13430M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25
mRNA.BJAM.scaffold3262.13431
mRNA.BJAM.scaffold3262.13432
mRNA.BJAM.scaffold3263.13433
mRNA.BJAM.scaffold3264.13434
mRNA.BJAM.scaffold3264.13435
mRNA.BJAM.scaffold3265.13436NEDD4-BINDING PROTEIN 2
mRNA.BJAM.scaffold3265.13437NEDD4-BINDING PROTEIN 2
mRNA.BJAM.scaffold3266.13438
mRNA.BJAM.scaffold3267.13439
mRNA.BJAM.scaffold3267.13440
mRNA.BJAM.scaffold3267.13441MUSCLEBLIND-LIKE PROTEIN
mRNA.BJAM.scaffold3267.13442VOLTAGE-GATED POTASSIUM CHANNEL
mRNA.BJAM.scaffold3268.13443
mRNA.BJAM.scaffold327.2499TRANSLATION FACTOR
mRNA.BJAM.scaffold327.2500
mRNA.BJAM.scaffold3270.13444
mRNA.BJAM.scaffold3270.13445
mRNA.BJAM.scaffold3271.13446SEC61 GAMMA SUBUNIT
mRNA.BJAM.scaffold3271.13447CYCLIN Y, ISOFORM A
mRNA.BJAM.scaffold3275.13448ANION EXCHANGE PROTEIN
mRNA.BJAM.scaffold3276.13449
mRNA.BJAM.scaffold3276.13450DNA2/NAM7 HELICASE FAMILY
mRNA.BJAM.scaffold3277.13451SUCCINYL-COA LIGASE SUBUNIT ALPHA
mRNA.BJAM.scaffold3277.13452
mRNA.BJAM.scaffold3277.13453MYOSIN LIGHT CHAIN 1, 3
mRNA.BJAM.scaffold3279.13454
mRNA.BJAM.scaffold3279.13455
mRNA.BJAM.scaffold328.2501PHOSPHATE TRANSPORTER
mRNA.BJAM.scaffold328.2502
mRNA.BJAM.scaffold328.2503
mRNA.BJAM.scaffold328.250439S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
mRNA.BJAM.scaffold328.2505N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE
mRNA.BJAM.scaffold328.2506EG:EG0003.4 PROTEIN-RELATED
mRNA.BJAM.scaffold328.2507EG:EG0003.4 PROTEIN-RELATED
mRNA.BJAM.scaffold328.2508
mRNA.BJAM.scaffold328.2509CAT EYE SYNDROME CRITICAL REGION PROTEIN 2
mRNA.BJAM.scaffold328.2510CAT EYE SYNDROME CRITICAL REGION PROTEIN 2
mRNA.BJAM.scaffold328.2511MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
mRNA.BJAM.scaffold328.2512MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
mRNA.BJAM.scaffold3280.13456SYNAPTOTAGMIN
mRNA.BJAM.scaffold3280.13457
mRNA.BJAM.scaffold3280.13458
mRNA.BJAM.scaffold3280.13459
mRNA.BJAM.scaffold3280.13460ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1
mRNA.BJAM.scaffold3280.13461RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE
mRNA.BJAM.scaffold3283.13462
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