About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3283.13463
mRNA.BJAM.scaffold3283.13464DELTA-AMINOLEVULINIC ACID DEHYDRATASE
mRNA.BJAM.scaffold3284.13465PROPERDIN
mRNA.BJAM.scaffold3284.13466
mRNA.BJAM.scaffold3284.13467NETRIN RECEPTOR UNC5
mRNA.BJAM.scaffold3285.13468TWEETY-RELATED
mRNA.BJAM.scaffold3285.13469
mRNA.BJAM.scaffold3286.13470INTEGRATOR COMPLEX SUBUNIT 9
mRNA.BJAM.scaffold3286.13471ARMADILLO REPEAT CONTAINING PROTEIN
mRNA.BJAM.scaffold3287.13472
mRNA.BJAM.scaffold3287.13473
mRNA.BJAM.scaffold3287.13474VACUOLAR PROTEIN SORTING 26 RELATED
mRNA.BJAM.scaffold3288.13475NEUROTRANSMITTER GATED ION CHANNEL
mRNA.BJAM.scaffold3289.13476
mRNA.BJAM.scaffold3289.13477SPECKLE-TYPE POZ PROTEIN
mRNA.BJAM.scaffold329.2513
mRNA.BJAM.scaffold329.2514
mRNA.BJAM.scaffold329.2515
mRNA.BJAM.scaffold329.2516
mRNA.BJAM.scaffold329.2517HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED
mRNA.BJAM.scaffold329.2518
mRNA.BJAM.scaffold329.2519MYOSIN HEAVY CHAIN, NON-MUSCLE
mRNA.BJAM.scaffold329.2520OUT AT FIRST
mRNA.BJAM.scaffold329.2521CALPONIN
mRNA.BJAM.scaffold329.2522SYNAPTOTAGMIN
mRNA.BJAM.scaffold329.2523PYRROLINE-5-CARBOXYLATE REDUCTASE
mRNA.BJAM.scaffold329.2524
mRNA.BJAM.scaffold329.2525CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
mRNA.BJAM.scaffold329.2526F-ACTIN-CAPPING PROTEIN SUBUNIT BETA
mRNA.BJAM.scaffold3290.13478
mRNA.BJAM.scaffold3290.13479
mRNA.BJAM.scaffold3290.13480CYCLIN
mRNA.BJAM.scaffold3290.13481
mRNA.BJAM.scaffold3290.13482SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
mRNA.BJAM.scaffold3291.13483
mRNA.BJAM.scaffold3292.13484ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1
mRNA.BJAM.scaffold3294.13487LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
mRNA.BJAM.scaffold3294.13488LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
mRNA.BJAM.scaffold3294.13489
mRNA.BJAM.scaffold3297.13490EGF-LIKE DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold3297.13491EGF-LIKE DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold3297.13492FIBRILLIN-RELATED
mRNA.BJAM.scaffold3297.13493FIBRILLIN-RELATED
mRNA.BJAM.scaffold3298.13494CCCH ZINC FINGER/TIS11-RELATED
mRNA.BJAM.scaffold3298.13495
mRNA.BJAM.scaffold3299.13496METEORIN-LIKE PROTEIN
mRNA.BJAM.scaffold3299.13497METEORIN-LIKE PROTEIN
mRNA.BJAM.scaffold3299.13498STABILIZER OF AXONEMAL MICROTUBULES 2
mRNA.BJAM.scaffold3299.13499HEXOKINASE
mRNA.BJAM.scaffold33.250UNCHARACTERIZED
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