About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3333.13561
mRNA.BJAM.scaffold3333.13562GLYCEROL-3-PHOSPHATE DEHYDROGENASE
mRNA.BJAM.scaffold3333.13563
mRNA.BJAM.scaffold3335.13564AN1-TYPE ZINC FINGER PROTEIN 4
mRNA.BJAM.scaffold3335.13565SUPPRESSOR OF VARIEGATION 4-20-RELATED
mRNA.BJAM.scaffold3335.13566
mRNA.BJAM.scaffold3335.13567HEAT SHOCK PROTEIN 90 FAMILY MEMBER
mRNA.BJAM.scaffold3335.13568UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT
mRNA.BJAM.scaffold3335.13569
mRNA.BJAM.scaffold3335.13570UNCHARACTERIZED
mRNA.BJAM.scaffold3339.13572
mRNA.BJAM.scaffold3339.13573
mRNA.BJAM.scaffold3339.13574NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1
mRNA.BJAM.scaffold334.2556NEUROPEPTIDES RECEPTOR
mRNA.BJAM.scaffold334.2557
mRNA.BJAM.scaffold334.2558NEUROPEPTIDES RECEPTOR
mRNA.BJAM.scaffold3340.13575G-PROTEIN COUPLED RECEPTOR
mRNA.BJAM.scaffold3340.13576EIF-1A
mRNA.BJAM.scaffold3340.13577CALCYPHOSIN
mRNA.BJAM.scaffold3340.13578GEMININ
mRNA.BJAM.scaffold3341.13579MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED
mRNA.BJAM.scaffold3341.13580HEPARANASE
mRNA.BJAM.scaffold3341.13581HEPARANASE
mRNA.BJAM.scaffold3341.13582ACTIN
mRNA.BJAM.scaffold3341.13583
mRNA.BJAM.scaffold3341.13584DUF946 FAMILY PROTEIN
mRNA.BJAM.scaffold3341.13585
mRNA.BJAM.scaffold3341.13586PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
mRNA.BJAM.scaffold3341.13587AP COMPLEX SUBUNIT MU
mRNA.BJAM.scaffold3341.13588
mRNA.BJAM.scaffold3342.13589DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1
mRNA.BJAM.scaffold3342.13590
mRNA.BJAM.scaffold3343.13591MULTIPLE PDZ DOMAIN PROTEIN
mRNA.BJAM.scaffold3343.13592XPA-BINDING PROTEIN 1-RELATED
mRNA.BJAM.scaffold3343.13593LEUCYL-TRNA SYNTHETASE
mRNA.BJAM.scaffold3343.13594WD REPEAT-CONTAINING PROTEIN 36
mRNA.BJAM.scaffold3344.13595CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
mRNA.BJAM.scaffold3344.13596
mRNA.BJAM.scaffold3345.13597CYTOCHROME C1 HEME LYASE
mRNA.BJAM.scaffold3346.13598UNCHARACTERIZED
mRNA.BJAM.scaffold3346.13599UNCHARACTERIZED
mRNA.BJAM.scaffold3348.13600CALPONIN
mRNA.BJAM.scaffold3348.13601INSULIN GENE ENHANCER PROTEIN
mRNA.BJAM.scaffold3348.13602
mRNA.BJAM.scaffold3348.13603
mRNA.BJAM.scaffold335.2559GERANYLGERANYL PYROPHOSPHATE SYNTHASE
mRNA.BJAM.scaffold335.2560EXONUCLEASE V
mRNA.BJAM.scaffold335.2561
mRNA.BJAM.scaffold335.2562BTB POZ DOMAIN CONTAINING 12
mRNA.BJAM.scaffold335.2563INOSITOL POLYPHOSPHATE KINASE
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