About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05892-
Paelopatides05893SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides05894SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides05895SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides05896-
Paelopatides05897HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides05898SEC61 SUBUNIT BETA
Paelopatides05900-
Paelopatides05901SERINE/THREONINE-PROTEIN KINASE
Paelopatides05902OPSIN
Paelopatides05903PROTEIN CBG23806
Paelopatides05904-
Paelopatides05905-
Paelopatides05909LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides05910SULFATASE MODIFYING FACTOR 1, 2
Paelopatides05911-
Paelopatides05912-
Paelopatides059163-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
Paelopatides05917PROTEIN CBG26694
Paelopatides05918PROTEIN CBG26694
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