About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides05961RETROTRANSPOSON
Paelopatides05962SI:CH211-108C17.2-RELATED-RELATED
Paelopatides05963-
Paelopatides05964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05965ACYL-COA-BINDING PROTEIN, ACBP
Paelopatides05968TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides05969TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides05970PROTEIN CBG26694
Paelopatides05971SI:CH211-196P9.1-RELATED
Paelopatides05972ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides05973-
Paelopatides05974REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05975-
Paelopatides05976-
Paelopatides05977ENZYMATIC POLYPROTEIN-RELATED
Paelopatides05978PROTEIN CBG26694
Paelopatides05979SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides05980REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides05981ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides05982REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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