About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020302.1LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
ENSZWYP00000020303.1
ENSZWYP00000020304.1
ENSZWYP00000020305.1IRON-SULFUR CLUSTER ASSEMBLY PROTEIN
ENSZWYP00000020306.1SOLUTE CARRIER FAMILY 22 MEMBER
ENSZWYP00000020307.1DYMECLIN
ENSZWYP00000020308.1
ENSZWYP00000020309.1LSM1
ENSZWYP00000020310.1DIMETHYLADENOSINE TRANSFERASE
ENSZWYP00000020311.1
ENSZWYP00000020312.1
ENSZWYP00000020313.1SH3-BINDING
ENSZWYP00000020314.1
ENSZWYP00000020315.1
ENSZWYP00000020316.1GUANYLYL CYCLASE
ENSZWYP00000020317.1LSM1
ENSZWYP00000020318.1
ENSZWYP00000020319.1SH3-BINDING
ENSZWYP00000020320.1NUCLEOLAR PROTEIN 12
ENSZWYP00000020321.1ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
ENSZWYP00000020322.1
ENSZWYP00000020323.1
ENSZWYP00000020324.1UNCHARACTERIZED
ENSZWYP00000020325.1
ENSZWYP00000020326.1
ENSZWYP00000020327.1ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
ENSZWYP00000020328.1FIBRILLIN-RELATED
ENSZWYP00000020329.1DOCKING PROTEIN RELATED
ENSZWYP00000020330.1
ENSZWYP00000020331.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000020332.1
ENSZWYP00000020333.1PEROXISOMAL BIOGENESIS FACTOR 3
ENSZWYP00000020334.1UNCHARACTERIZED
ENSZWYP00000020335.1SI:CH211-108C17.2-RELATED-RELATED
ENSZWYP00000020336.1UNCHARACTERIZED
ENSZWYP00000020337.1XK-RELATED PROTEIN
ENSZWYP00000020338.1
ENSZWYP00000020339.1
ENSZWYP00000020340.1CYTOCHROME B5
ENSZWYP00000020341.1
ENSZWYP00000020342.1SH2 DOMAIN CONTAINING PROTEIN
ENSZWYP00000020343.1UNCHARACTERIZED
ENSZWYP00000020344.130S RIBOSOMAL PROTEIN S14
ENSZWYP00000020345.1SULFITE REDUCTASE
ENSZWYP00000020346.1
ENSZWYP00000020347.1XK-RELATED PROTEIN
ENSZWYP00000020348.1OXIDOREDUCTASE-RELATED
ENSZWYP00000020349.1ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1
ENSZWYP00000020350.1HEPARAN SULFATE SULFOTRANSFERASE
ENSZWYP00000020351.1
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