About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020452.1ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020453.1
ENSZWYP00000020454.1METHIONYL-TRNA FORMYLTRANSFERASE
ENSZWYP00000020455.1
ENSZWYP00000020456.1
ENSZWYP00000020457.1HISTONE DEACETYLASE HDAC1-RELATED
ENSZWYP00000020458.1
ENSZWYP00000020459.1SET DOMAIN-CONTAINING PROTEIN-RELATED
ENSZWYP00000020460.1ABRAXAS FAMILY MEMBER
ENSZWYP00000020461.1RIBOSOMAL PROTEIN S6 KINASE
ENSZWYP00000020462.1IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
ENSZWYP00000020463.1ZGC:174356
ENSZWYP00000020464.1
ENSZWYP00000020465.1PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
ENSZWYP00000020466.1HISTONE DEACETYLASE HDAC1-RELATED
ENSZWYP00000020467.1
ENSZWYP00000020468.1LD44762P
ENSZWYP00000020469.1IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED
ENSZWYP00000020470.1
ENSZWYP00000020471.1ZGC:174356
ENSZWYP00000020472.1SERINE/THREONINE-PROTEIN KINASE
ENSZWYP00000020473.1ENGULFMENT AND CELL MOTILITY
ENSZWYP00000020474.1
ENSZWYP00000020475.1
ENSZWYP00000020476.1
ENSZWYP00000020477.1PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
ENSZWYP00000020478.1ACROSIN-RELATED
ENSZWYP00000020479.1UBIQUITIN-CONJUGATING ENZYME E2
ENSZWYP00000020480.1
ENSZWYP00000020481.1
ENSZWYP00000020482.1NEUROPEPTIDE Y RECEPTOR
ENSZWYP00000020483.1VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28
ENSZWYP00000020484.1
ENSZWYP00000020485.1ENGULFMENT AND CELL MOTILITY
ENSZWYP00000020486.1UBIQUITIN-CONJUGATING ENZYME E2
ENSZWYP00000020487.1SERINE/THREONINE-PROTEIN KINASE
ENSZWYP00000020488.1
ENSZWYP00000020489.1
ENSZWYP00000020490.1ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
ENSZWYP00000020491.1
ENSZWYP00000020492.1NEUROPEPTIDE Y RECEPTOR
ENSZWYP00000020493.1VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28
ENSZWYP00000020494.1UNCHARACTERIZED
ENSZWYP00000020495.1
ENSZWYP00000020496.1
ENSZWYP00000020497.1
ENSZWYP00000020498.1SERINE/THREONINE-PROTEIN KINASE
ENSZWYP00000020499.1
ENSZWYP00000020500.1ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN
ENSZWYP00000020501.1ZINC FINGER PROTEIN
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