About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17793-
Clavulariidae_g17794REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17795-
Clavulariidae_g17796-
Clavulariidae_g17797IG-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g17798CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Clavulariidae_g17799-
Clavulariidae_g178OSJNBA0013A04.12 PROTEIN
Clavulariidae_g1780TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g17800JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE
Clavulariidae_g17801HEAT SHOCK PROTEIN 70KDA
Clavulariidae_g17802RETROTRANSPOSON
Clavulariidae_g17803-
Clavulariidae_g17804-
Clavulariidae_g17805-
Clavulariidae_g17806-
Clavulariidae_g17807HSC70-INTERACTING PROTEIN
Clavulariidae_g17808UNCHARACTERIZED
Clavulariidae_g17809ATP-BINDING CASSETTE SUB-FAMILY C
Clavulariidae_g1781-

Comparative Genomic Information (Based on comparison with nearshore relatives)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0004842ubiquitin-protein transferase activityGOMolecular Function-expanded-1.14E-118
GO:0006310DNA recombinationGOBiological Process-expanded-7.06E-64
GO:0003676nucleic acid bindingGOMolecular Function-expanded-5.89E-55
GO:0005515protein bindingGOMolecular Function-expanded-1.91E-42
GO:0015074DNA integrationGOBiological Process-expanded-1.81E-40
GO:0003677DNA bindingGOMolecular Function-expanded-1.76E-36
GO:0016021integral component of membraneGOCellular Component-expanded-3.78E-34
GO:0006281DNA repairGOBiological Process-expanded-8.38E-34
GO:0000723telomere maintenanceGOBiological Process-expanded-6.14E-29
GO:0046983protein dimerization activityGOMolecular Function-expanded-8.83E-27
GO:0003678DNA helicase activityGOMolecular Function-expanded-5.75E-25
GO:0006313transposition, DNA-mediatedGOBiological Process-expanded-1.14E-21
GO:0016020membraneGOCellular Component-expanded-1.90E-17
GO:0016020membraneGOCellular Component-contracted-6.38E-08
GO:0004803transposase activityGOMolecular Function-expanded-3.81E-17
GO:0055085transmembrane transportGOBiological Process-expanded-1.30E-15
GO:0003824catalytic activityGOMolecular Function-expanded-9.79E-13
GO:0007186G protein-coupled receptor signaling pathwayGOBiological Process-expanded-7.56E-11
GO:0004930G protein-coupled receptor activityGOMolecular Function-expanded-1.10E-10
GO:0055114oxidation-reduction processGOBiological Process-expanded-7.07E-10
GO:00353125'-3' exodeoxyribonuclease activityGOMolecular Function-expanded-7.47E-10
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