About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g17829FI24210P1
Clavulariidae_g178352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g17830PREFOLDIN SUBUNIT 2
Clavulariidae_g17831-
Clavulariidae_g17832-
Clavulariidae_g17833PROLINE AND SERINE-RICH PROTEIN 3
Clavulariidae_g17834CAMK FAMILY PROTEIN KINASE
Clavulariidae_g17835-
Clavulariidae_g17836-
Clavulariidae_g17837EIF4G DOMAIN PROTEIN
Clavulariidae_g17838-
Clavulariidae_g17839REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1784REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1784015-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Clavulariidae_g17841TRANSLATION FACTOR GUF1-RELATED
Clavulariidae_g17842BICD FAMILY-LIKE CARGO ADAPTER
Clavulariidae_g17843PROTEIN CBG26694
Clavulariidae_g17844SARCOMA ANTIGEN NY-SAR-95-RELATED
Clavulariidae_g17845NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
Clavulariidae_g17846CYCLIC NUCLEOTIDE PHOSPHODIESTERASE

Comparative Genomic Information (Based on comparison with nearshore relatives)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0004842ubiquitin-protein transferase activityGOMolecular Function-expanded-1.14E-118
GO:0006310DNA recombinationGOBiological Process-expanded-7.06E-64
GO:0003676nucleic acid bindingGOMolecular Function-expanded-5.89E-55
GO:0005515protein bindingGOMolecular Function-expanded-1.91E-42
GO:0015074DNA integrationGOBiological Process-expanded-1.81E-40
GO:0003677DNA bindingGOMolecular Function-expanded-1.76E-36
GO:0016021integral component of membraneGOCellular Component-expanded-3.78E-34
GO:0006281DNA repairGOBiological Process-expanded-8.38E-34
GO:0000723telomere maintenanceGOBiological Process-expanded-6.14E-29
GO:0046983protein dimerization activityGOMolecular Function-expanded-8.83E-27
GO:0003678DNA helicase activityGOMolecular Function-expanded-5.75E-25
GO:0006313transposition, DNA-mediatedGOBiological Process-expanded-1.14E-21
GO:0016020membraneGOCellular Component-expanded-1.90E-17
GO:0016020membraneGOCellular Component-contracted-6.38E-08
GO:0004803transposase activityGOMolecular Function-expanded-3.81E-17
GO:0055085transmembrane transportGOBiological Process-expanded-1.30E-15
GO:0003824catalytic activityGOMolecular Function-expanded-9.79E-13
GO:0007186G protein-coupled receptor signaling pathwayGOBiological Process-expanded-7.56E-11
GO:0004930G protein-coupled receptor activityGOMolecular Function-expanded-1.10E-10
GO:0055114oxidation-reduction processGOBiological Process-expanded-7.07E-10
GO:00353125'-3' exodeoxyribonuclease activityGOMolecular Function-expanded-7.47E-10
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