About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11226-
Paelopatides11227FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides11228-
Paelopatides11229TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3
Paelopatides11230TRANSPOSON
Paelopatides11231-
Paelopatides11232-
Paelopatides11233LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides11234ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11235TETRATRICOPEPTIDE REPEAT PROTEIN 22
Paelopatides11236REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11237-
Paelopatides11238MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides11239REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11240TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides11241DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides11242AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides11243NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B
Paelopatides11244VACUOLAR PROTON ATPASES
Paelopatides11245VACUOLAR PROTON ATPASES
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