About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_8188-0.18PROTEIN DISULFIDE ISOMERASE
Bpl_scaf_8188-0.7MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
Bpl_scaf_8188-1.19ARRESTIN DOMAIN CONTAINING PROTEIN
Bpl_scaf_8188-1.46ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_8188-1.49CALCIUM BINDING PROTEINS
Bpl_scaf_8188-1.51CALCIUM BINDING PROTEINS
Bpl_scaf_8188-1.52CALCIUM BINDING PROTEINS
Bpl_scaf_8188-1.53GLYCOSYL HYDROLASE
Bpl_scaf_8189-0.4
Bpl_scaf_8197-0.8COPPER AMINE OXIDASE
Bpl_scaf_8199-0.0
Bpl_scaf_8204-0.5
Bpl_scaf_8204-0.6
Bpl_scaf_8204-1.0
Bpl_scaf_8204-1.16
Bpl_scaf_8204-1.18ANKYRIN REPEAT-CONTAINING
Bpl_scaf_8204-1.2
Bpl_scaf_8204-1.60MYOTROPHIN
Bpl_scaf_8204-1.61
Bpl_scaf_8207-0.0
Bpl_scaf_8212-0.16UNCHARACTERIZED
Bpl_scaf_8212-0.4
Bpl_scaf_8212-0.7BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_8212-1.2BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_8212-1.4
Bpl_scaf_8212-2.0
Bpl_scaf_8212-2.1
Bpl_scaf_8212-2.36BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_8221-0.3
Bpl_scaf_8225-0.17SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE
Bpl_scaf_8225-0.18ZINC FINGER PROTEIN 207
Bpl_scaf_8225-0.20
Bpl_scaf_8225-0.7PHOSPHOMANNOMUTASE
Bpl_scaf_8225-1.23HIGH-AFFINITY CHOLINE TRANSPORTER 1
Bpl_scaf_8225-1.24PROTEASE M14 CARBOXYPEPTIDASE
Bpl_scaf_8225-1.25PROTEASE M14 CARBOXYPEPTIDASE
Bpl_scaf_8225-1.26HIGH-AFFINITY CHOLINE TRANSPORTER 1
Bpl_scaf_8225-2.19BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
Bpl_scaf_8225-2.6ZGC:174356
Bpl_scaf_8225-2.7
Bpl_scaf_8229-0.2EPHRIN TYPE-B RECEPTOR
Bpl_scaf_8236-0.4
Bpl_scaf_8236-1.4
Bpl_scaf_8236-1.6RAPSYN-RELATED
Bpl_scaf_8236-1.7
Bpl_scaf_8236-2.19
Bpl_scaf_8236-2.22
Bpl_scaf_8236-2.23
Bpl_scaf_8236-2.24POLYCYSTIN FAMILY MEMBER
Bpl_scaf_8236-2.25POLYCYSTIN FAMILY MEMBER
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