About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG03237.1RETINOL DEHYDROGENASE
RPACG03237.2
RPACG03238.1SERINE/THREONINE-PROTEIN KINASE FRAY2
RPACG03239.1
RPACG03240.1
RPACG03240.2
RPACG03241.1
RPACG03242.1AGAP008170-PA
RPACG03243.1L-THREONINE 3-DEHYDROGENASE
RPACG03244.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG03245.1
RPACG03246.1POLYCYSTIN FAMILY MEMBER
RPACG03247.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03248.1
RPACG03249.1
RPACG03250.1
RPACG03250.2
RPACG03251.1POLYCYSTIN FAMILY MEMBER
RPACG03251.2
RPACG03252.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03253.1POLYCYSTIN FAMILY MEMBER
RPACG03253.2
RPACG03253.3
RPACG03254.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03255.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03256.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG03257.1
RPACG03258.1EXPRESSED PROTEIN
RPACG03259.1
RPACG03260.1
RPACG03260.2
RPACG03261.1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG03262.1LIPASE
RPACG03263.1
RPACG03264.1
RPACG03264.2
RPACG03264.3
RPACG03265.1RIBOSOMAL PROTEIN L30
RPACG03266.1PROMININ PROM PROTEIN
RPACG03267.1
RPACG03268.1XK-RELATED PROTEIN
RPACG03269.1
RPACG03270.1
RPACG03270.2
RPACG03271.1
RPACG03272.1TRANSFERASE, PUTATIVE-RELATED
RPACG03273.1TRANSFERASE, PUTATIVE-RELATED
RPACG03274.1
RPACG03274.2
RPACG03274.3
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