About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG03321.1GLYCOSYLTRANSFERASE
RPACG03322.1GRIP-1 ASSOCIATED PROTEIN 1
RPACG03323.1
RPACG03324.1
RPACG03324.2
RPACG03325.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG03325.2
RPACG03325.3
RPACG03326.1
RPACG03327.1
RPACG03328.1
RPACG03329.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG03330.1COILED-COIL DOMAIN-CONTAINING PROTEIN 51
RPACG03331.1OTU DOMAIN CONTAINING PROTEIN
RPACG03332.1SERINE/THREONINE-PROTEIN KINASE PIM
RPACG03333.1
RPACG03334.1
RPACG03334.2
RPACG03335.1
RPACG03336.1
RPACG03337.1GLUTAMINE-TRNA LIGASE
RPACG03338.1
RPACG03339.1ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
RPACG03340.1ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1
RPACG03341.1IONOTROPIC GLUTAMATE RECEPTOR
RPACG03342.1UBIQUITIN-ACTIVATING ENZYME E1
RPACG03343.1PRA1 PROTEIN
RPACG03344.1F-BOX ONLY PROTEIN 7
RPACG03345.1ETS
RPACG03345.2
RPACG03346.1
RPACG03347.1
RPACG03348.1IG-LIKE DOMAIN-CONTAINING PROTEIN
RPACG03349.1
RPACG03350.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG03351.1
RPACG03352.1
RPACG03352.2
RPACG03353.1
RPACG03354.1
RPACG03355.1
RPACG03356.1
RPACG03357.1
RPACG03358.1
RPACG03359.1
RPACG03360.1
RPACG03361.1
RPACG03362.1
RPACG03363.1
RPACG03364.1
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