Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_038258-T1 | FATTY ACID SYNTHASE |
LLU|FUN_038259-T1 | |
LLU|FUN_038260-T1 | |
LLU|FUN_038261-T1 | TRICHOHYALIN-RELATED |
LLU|FUN_038262-T1 | CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP |
LLU|FUN_038263-T1 | |
LLU|FUN_038264-T1 | |
LLU|FUN_038265-T1 | |
LLU|FUN_038266-T1 | |
LLU|FUN_038267-T1 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR 2 |
LLU|FUN_038268-T1 | |
LLU|FUN_038269-T1 | METAL TRANSPORTER CNNM |
LLU|FUN_038270-T1 | |
LLU|FUN_038271-T1 | UNCHARACTERIZED |
LLU|FUN_038272-T1 | BIORIENTATION OF CHROMOSOMES IN CELL DIVISION 1 LIKE 1 |
LLU|FUN_038273-T1 | TENASCIN |
LLU|FUN_038274-T1 | |
LLU|FUN_038275-T1 | ACTIN |
LLU|FUN_038276-T1 | SUPPRESSOR OF FUSED |
LLU|FUN_038277-T1 | UNCHARACTERIZED |
LLU|FUN_038278-T1 | LIN-24 (TWENTY-FOUR) LIKE |
LLU|FUN_038279-T1 | LIN-24 (TWENTY-FOUR) LIKE |
LLU|FUN_038280-T1 | |
LLU|FUN_038281-T1 | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT |
LLU|FUN_038282-T1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 |
LLU|FUN_038283-T1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
LLU|FUN_038284-T1 | |
LLU|FUN_038285-T1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
LLU|FUN_038286-T1 | |
LLU|FUN_038287-T1 | GOLGI MEMBRANE PROTEIN YIP1 |
LLU|FUN_038288-T1 | GOLGI MEMBRANE PROTEIN YIP1 |
LLU|FUN_038289-T1 | |
LLU|FUN_038290-T1 | UNCHARACTERIZED |
LLU|FUN_038291-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_038292-T1 | |
LLU|FUN_038293-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_038294-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_038295-T1 | |
LLU|FUN_038296-T1 | |
LLU|FUN_038297-T1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
LLU|FUN_038298-T1 | ZGC:195170 |
LLU|FUN_038299-T1 | PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN |
LLU|FUN_038300-T1 | THYROTROPH EMBRYONIC FACTOR RELATED |
LLU|FUN_038301-T1 | |
LLU|FUN_038302-T1 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
LLU|FUN_038303-T1 | |
LLU|FUN_038304-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_038305-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
LLU|FUN_038306-T1 | |
LLU|FUN_038307-T1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |