About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04424.1MUCIN-17
RPACG04425.1
RPACG04426.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04427.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04428.1
RPACG04429.1REPETIN
RPACG04430.1
RPACG04431.1PROTEIN EVA-1
RPACG04432.1
RPACG04433.1
RPACG04434.1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
RPACG04435.1IRE1-RELATED
RPACG04436.1
RPACG04437.1
RPACG04438.1
RPACG04439.1
RPACG04440.1
RPACG04441.1
RPACG04442.1
RPACG04443.1
RPACG04444.1
RPACG04445.1
RPACG04446.1APG9 AUTOPHAGY 9
RPACG04447.1UNCHARACTERIZED
RPACG04448.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04449.1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
RPACG04450.1
RPACG04451.1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
RPACG04452.1
RPACG04453.1
RPACG04454.1
RPACG04455.1PDZ AND LIM DOMAIN PROTEIN ZASP
RPACG04456.1MUCIN-17
RPACG04457.1PDZ AND LIM DOMAIN PROTEIN ZASP
RPACG04458.1
RPACG04459.1
RPACG04460.1
RPACG04461.1
RPACG04462.1
RPACG04462.2
RPACG04463.1
RPACG04464.1
RPACG04465.1
RPACG04466.1
RPACG04467.1
RPACG04468.1
RPACG04469.1COLLAGEN ALPHA
RPACG04470.1
RPACG04471.1SI:CH211-201H21.5-RELATED
RPACG04472.1PDZ AND LIM DOMAIN PROTEIN ZASP
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