About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504799.37 37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04647.1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG04648.1
RPACG04649.1
RPACG04650.1G-PROTEIN COUPLED RECEPTOR
RPACG04651.1
RPACG04652.1
RPACG04653.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
RPACG04654.1BETA TRANSDUCIN-RELATED PROTEIN
RPACG04655.1
RPACG04655.2
RPACG04655.3
RPACG04656.1
RPACG04657.1
RPACG04658.1
RPACG04659.1
RPACG04660.1
RPACG04661.1
RPACG04662.1
RPACG04663.1
RPACG04664.1
RPACG04665.1
RPACG04666.1
RPACG04667.1
RPACG04668.1FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN
RPACG04669.1
RPACG04670.1TENSIN
RPACG04671.1ZINC FINGER AND SCAN DOMAIN-CONTAINING
RPACG04672.1ZINC FINGER PROTEIN
RPACG04673.1LP04239P
RPACG04674.1-
RPACG04675.1ENDO-1,4-BETA-GLUCANASE
RPACG04676.1ENDO-1,4-BETA-GLUCANASE
RPACG04677.1CGI-141-RELATED/LIPASE CONTAINING PROTEIN
RPACG04678.1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
RPACG04679.1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
RPACG04680.1
RPACG04681.1UNCHARACTERIZED
RPACG04682.1
RPACG04683.1BLR7054 PROTEIN
RPACG04683.2
RPACG04683.3
RPACG04684.1
RPACG04684.2
RPACG04685.1GLYCOSYLTRANSFERASE
RPACG04686.1GLYCOSYLTRANSFERASE-RELATED
RPACG04686.2
RPACG04687.1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
RPACG04688.1
RPACG04689.1
RPACG04690.1
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