About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26569TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides26570-
Paelopatides26571REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26572PROTEIN CBG26694
Paelopatides26573ENZYMATIC POLYPROTEIN-RELATED
Paelopatides26574REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26575ATP-DEPENDENT DNA HELICASE
Paelopatides26576-
Paelopatides26577INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides26578ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides26579BUCENTAUR RELATED
Paelopatides26580REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26583NETRIN RECEPTOR UNC5
Paelopatides26584-
Paelopatides26585SEC31-RELATED PROTEIN
Paelopatides26586REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides26587GAG-RELATED PROTEIN
Paelopatides26588BUCENTAUR RELATED
Paelopatides26589-
Paelopatides26590PROTEIN CBG26694
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