About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26639PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides26640RETROTRANSPOSON
Paelopatides26641NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides26642-
Paelopatides26643-
Paelopatides26644-
Paelopatides26645CLATHRIN HEAVY CHAIN RELATED
Paelopatides26646CLATHRIN HEAVY CHAIN RELATED
Paelopatides26647COILED-COIL DOMAIN-CONTAINING PROTEIN 138
Paelopatides26648-
Paelopatides26649TRANSLATION FACTOR GUF1-RELATED
Paelopatides26650CHROMOSOME 8 OPEN READING FRAME 48
Paelopatides26651CHLORIDE CHANNEL PROTEIN
Paelopatides26652CHLORIDE CHANNEL PROTEIN
Paelopatides26653-
Paelopatides26654LIM DOMAIN ONLY PROTEIN 7
Paelopatides26655POL PROTEIN
Paelopatides26656PROTEIN CBG26694
Paelopatides26657ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides26658-
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