About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29112-
Paelopatides29113-
Paelopatides29114ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides29115-
Paelopatides29116-
Paelopatides29117BLR2807 PROTEIN
Paelopatides29118PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29119INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides29120PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29121REVERSE TRANSCRIPTASES
Paelopatides29122REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29123CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides29124INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides29125REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29126-
Paelopatides29127-
Paelopatides29128DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides2912952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides29130NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides29131-
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