About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29132-
Paelopatides29133-
Paelopatides29134GDP-MANNOSE 4,6-DEHYDRATASE
Paelopatides29135-
Paelopatides29136-
Paelopatides29137-
Paelopatides29138REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29139SI:CH211-196P9.1-RELATED
Paelopatides29140ELECTRON TRANSPORT OXIDOREDUCTASE
Paelopatides29142-
Paelopatides29143TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides29144-
Paelopatides29145AMMECR1 HOMOLOG
Paelopatides29146-
Paelopatides29147-
Paelopatides29148-
Paelopatides29149SODIUM/HYDROGEN EXCHANGER
Paelopatides29150TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides29151WSCD FAMILY MEMBER CG9164
Paelopatides29152-
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