About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29195TRANSPOSON
Paelopatides29196TRANSPOSON
Paelopatides29197-
Paelopatides29198SER/THR-PROTEIN KINASE RIO2
Paelopatides29199-
Paelopatides29200PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides29201FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29202FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29203FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29204FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29205FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides29206D-XYLOSE-PROTON SYMPORTER-LIKE 2
Paelopatides2920752 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides29208-
Paelopatides29209SI:CH211-196P9.1-RELATED
Paelopatides29210-
Paelopatides29211-
Paelopatides29212PHOSPHATIDYLINOSITOL KINASE
Paelopatides29213-
Paelopatides29214IP13529P
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