Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_11503-0.8 | |
| Bpl_scaf_11509-0.9 | |
| Bpl_scaf_11516-0.11 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Bpl_scaf_11516-0.12 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Bpl_scaf_11516-0.13 | |
| Bpl_scaf_11525-0.2 | |
| Bpl_scaf_11525-0.6 | |
| Bpl_scaf_11525-0.8 | |
| Bpl_scaf_11525-0.9 | HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) |
| Bpl_scaf_11526-0.15 | OS01G0282866 PROTEIN |
| Bpl_scaf_11526-0.20 | TUBULIN |
| Bpl_scaf_11526-0.66 | TUBULIN |
| Bpl_scaf_11526-0.67 | |
| Bpl_scaf_11526-0.68 | |
| Bpl_scaf_11526-1.30 | TUBULIN |
| Bpl_scaf_11526-1.7 | |
| Bpl_scaf_11526-2.0 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Bpl_scaf_11526-2.1 | |
| Bpl_scaf_11526-3.13 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
| Bpl_scaf_11526-3.14 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Bpl_scaf_11526-3.20 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 |
| Bpl_scaf_11526-3.8 | APPLE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_11526-4.11 | |
| Bpl_scaf_11526-4.14 | |
| Bpl_scaf_11526-4.23 | |
| Bpl_scaf_11526-4.24 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_11526-4.4 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_11526-4.7 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_11526-4.8 | |
| Bpl_scaf_11526-5.16 | |
| Bpl_scaf_11526-5.18 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_11526-5.19 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_11526-6.10 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_11526-6.13 | |
| Bpl_scaf_11526-6.15 | BLR2807 PROTEIN |
| Bpl_scaf_11527-0.5 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Bpl_scaf_11536-0.4 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_11536-0.5 | TRAFFICKING KINESIN-BINDING PROTEIN |
| Bpl_scaf_11546-0.10 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_11546-0.4 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Bpl_scaf_11546-0.8 | PCD6 INTERACTING PROTEIN-RELATED |
| Bpl_scaf_11561-0.21 | SIDESTEP PROTEIN |
| Bpl_scaf_11561-0.24 | IG-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_11561-0.25 | |
| Bpl_scaf_11561-0.27 | |
| Bpl_scaf_11573-0.0 | |
| Bpl_scaf_11573-0.12 | LITHOSTATHINE |
| Bpl_scaf_11573-0.15 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_11573-0.19 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_11573-0.20 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
