About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_11663-1.5
Bpl_scaf_11663-1.8N4BP1-RELATED
Bpl_scaf_11663-2.7RNA PROCESSING PROTEIN LD23810P
Bpl_scaf_11663-2.9ENDO-ALPHA-1,2-MANNOSIDASE
Bpl_scaf_11663-3.2
Bpl_scaf_11663-3.4
Bpl_scaf_11663-3.5HIGH-AFFINITY CHOLINE TRANSPORTER 1
Bpl_scaf_11663-5.10
Bpl_scaf_11663-5.15
Bpl_scaf_11663-5.23
Bpl_scaf_11663-5.24
Bpl_scaf_11663-5.25
Bpl_scaf_11663-5.9
Bpl_scaf_11663-8.11VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Bpl_scaf_11663-8.14VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Bpl_scaf_11663-8.16VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Bpl_scaf_11663-9.12PUTATIVE-RELATED
Bpl_scaf_11663-9.6PROTEIN MIS12 HOMOLOG
Bpl_scaf_11672-0.6ZINC FINGER PROTEIN 142
Bpl_scaf_11672-0.7PHOSPHOPANTETHEINE TRANSFERASE
Bpl_scaf_11672-1.23GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Bpl_scaf_11672-1.25UNCHARACTERIZED
Bpl_scaf_11672-1.26REPLICATION PROTEIN A3
Bpl_scaf_11672-1.27SNRNP CORE PROTEIN FAMILY MEMBER
Bpl_scaf_11672-1.28METALLOPROTEASE TLDD
Bpl_scaf_11672-1.29GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Bpl_scaf_11672-1.50GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Bpl_scaf_11672-1.55GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Bpl_scaf_11680-0.2SKI ONCOGENE-RELATED
Bpl_scaf_11680-2.8CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_11689-0.2
Bpl_scaf_11692-0.3
Bpl_scaf_11692-1.6-
Bpl_scaf_11692-2.11CADHERIN-23
Bpl_scaf_11692-2.12CADHERIN-87A
Bpl_scaf_11692-2.3CADHERIN-23
Bpl_scaf_11692-2.5CADHERIN-23
Bpl_scaf_11693-0.0SOLUTE CARRIER FAMILY 13 MEMBER
Bpl_scaf_11696-0.2RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_11700-0.1
Bpl_scaf_11700-0.3
Bpl_scaf_11704-2.1
Bpl_scaf_11707-0.0
Bpl_scaf_11711-0.3
Bpl_scaf_11715-0.1
Bpl_scaf_11715-0.5
Bpl_scaf_11715-0.6
Bpl_scaf_11715-0.8
Bpl_scaf_11715-1.0
Bpl_scaf_11715-2.12LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR
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