About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33232-
Paelopatides33233-
Paelopatides33234-
Paelopatides33235NUCLEOPORIN NUP188 HOMOLOG
Paelopatides33236-
Paelopatides33237ACYL-COA DEHYDROGENASE
Paelopatides33238ACYL-COA DEHYDROGENASE
Paelopatides33239-
Paelopatides33240REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33241PROTEIN FAM133
Paelopatides33242-
Paelopatides33243HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
Paelopatides33244-
Paelopatides33245-
Paelopatides33246CYTOCHROME P450 FAMILY 3
Paelopatides33247NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Paelopatides33248PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides33249ARYLSULFATASE
Paelopatides33250MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
Paelopatides33251UNCHARACTERIZED
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