About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33172HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides33173DUAL SPECIFICITY PROTEIN PHOSPHATASE DDB_G0269404-RELATED
Paelopatides33174HEDGEHOG
Paelopatides33175GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides33176PROTEIN CBG26694
Paelopatides33177-
Paelopatides33178GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
Paelopatides33179-
Paelopatides33180PEPTIDYLPROLYL ISOMERASE
Paelopatides33181MYOMEGALIN
Paelopatides33182METALLOPROTEASE TLDD
Paelopatides33183DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE
Paelopatides33184SI:CH211-171H4.7-RELATED
Paelopatides33185MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED
Paelopatides33186GRB10 INTERACTING GYF PROTEIN
Paelopatides3318760S RIBOSOMAL PROTEIN L28
Paelopatides33188PSEUDOURIDINE SYNTHASE-RELATED
Paelopatides33189-
Paelopatides33190PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides33191PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
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