About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33293TRANSPOSON
Paelopatides33294T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED
Paelopatides33295SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33296SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33297N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides33298HYR DOMAIN-CONTAINING PROTEIN
Paelopatides33299-
Paelopatides33300RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides33301D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
Paelopatides33302D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
Paelopatides33303-
Paelopatides33304-
Paelopatides33305-
Paelopatides33306BETA-LACTAMASE-RELATED
Paelopatides33310-
Paelopatides33311ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides33312BUCENTAUR RELATED
Paelopatides33313-
Paelopatides33315GLUTAMINE SYNTHETASE
Paelopatides33316SARCOGLYCANS
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