Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ～1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
| Gene ID | Description |
|---|---|
| Clavulariidae_g10808 | EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED |
| Clavulariidae_g10809 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g1081 | |
| Clavulariidae_g10810 | SIMILAR TO RIKEN CDNA E130308A19 |
| Clavulariidae_g10811 | |
| Clavulariidae_g10812 | |
| Clavulariidae_g10813 | HMG DOMAIN-CONTAINING PROTEIN 3 |
| Clavulariidae_g10814 | - |
| Clavulariidae_g10815 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g10816 | |
| Clavulariidae_g10817 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10818 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g10819 | IP13529P |
| Clavulariidae_g1082 | ATP-DEPENDENT DNA HELICASE |
| Clavulariidae_g10820 | SI:CH211-196P9.1-RELATED |
| Clavulariidae_g10821 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Clavulariidae_g10822 | |
| Clavulariidae_g10823 | THAP DOMAIN-CONTAINING PROTEIN 6 |
| Clavulariidae_g10824 | PROTEIN, PUTATIVE-RELATED |
| Clavulariidae_g10825 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10826 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10827 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10828 | DNA HELICASE RECQ FAMILY MEMBER |
| Clavulariidae_g10829 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
| Clavulariidae_g1083 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10830 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10831 | |
| Clavulariidae_g10832 | |
| Clavulariidae_g10833 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10834 | |
| Clavulariidae_g10835 | UNCHARACTERIZED |
| Clavulariidae_g10836 | |
| Clavulariidae_g10837 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Clavulariidae_g10838 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10839 | |
| Clavulariidae_g1084 | COLLAGEN ALPHA |
| Clavulariidae_g10840 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
| Clavulariidae_g10841 | |
| Clavulariidae_g10842 | |
| Clavulariidae_g10843 | EXPRESSED PROTEIN |
| Clavulariidae_g10844 | |
| Clavulariidae_g10845 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| Clavulariidae_g10846 | |
| Clavulariidae_g10847 | BONE MARROW PROTEOGLYCAN |
| Clavulariidae_g10848 | |
| Clavulariidae_g10849 | |
| Clavulariidae_g1085 | |
| Clavulariidae_g10850 | PROTEIN CBG23806 |
| Clavulariidae_g10851 | PROTEIN, PUTATIVE-RELATED |
| Clavulariidae_g10852 |
