About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold335.2564ATP-DEPENDENT RNA HELICASE RHLE-RELATED
mRNA.BJAM.scaffold335.2565FIBRINOGEN/TENASCIN/ANGIOPOEITIN
mRNA.BJAM.scaffold335.2566FIBRINOGEN/TENASCIN/ANGIOPOEITIN
mRNA.BJAM.scaffold335.2567
mRNA.BJAM.scaffold335.2568FIBRINOGEN/TENASCIN/ANGIOPOEITIN
mRNA.BJAM.scaffold335.2569FIBRINOGEN/TENASCIN/ANGIOPOEITIN
mRNA.BJAM.scaffold3350.13604T-BOX PROTEIN-RELATED
mRNA.BJAM.scaffold3350.13605E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13606E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13607E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13608E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13609E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13610E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13611E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13612E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13613E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13614E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13615
mRNA.BJAM.scaffold3350.13616E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13617E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13618E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13619
mRNA.BJAM.scaffold3350.13620E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13621
mRNA.BJAM.scaffold3350.13622
mRNA.BJAM.scaffold3350.13623
mRNA.BJAM.scaffold3350.13624
mRNA.BJAM.scaffold3350.13625
mRNA.BJAM.scaffold3350.13626
mRNA.BJAM.scaffold3350.13627E3 UBIQUITIN-PROTEIN LIGASE UBR4
mRNA.BJAM.scaffold3350.13628
mRNA.BJAM.scaffold3352.13629RH14732P
mRNA.BJAM.scaffold3352.13630AMINO ACID TRANSPORTER
mRNA.BJAM.scaffold3353.13631SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED
mRNA.BJAM.scaffold3353.13632IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
mRNA.BJAM.scaffold3354.13633RAS-RELATED GTP BINDING RAG/GTR YEAST
mRNA.BJAM.scaffold3354.13634
mRNA.BJAM.scaffold3354.13635ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
mRNA.BJAM.scaffold3354.13636
mRNA.BJAM.scaffold3354.13637
mRNA.BJAM.scaffold3354.13638
mRNA.BJAM.scaffold3354.13639
mRNA.BJAM.scaffold3354.13640
mRNA.BJAM.scaffold3354.13641
mRNA.BJAM.scaffold3354.13642
mRNA.BJAM.scaffold3354.13643IFT140/172-RELATED
mRNA.BJAM.scaffold3354.13644IFT140/172-RELATED
mRNA.BJAM.scaffold3354.13645IFT140/172-RELATED
mRNA.BJAM.scaffold3355.13646
mRNA.BJAM.scaffold3355.13647ODD-SKIPPED - RELATED
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