About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3406.13767
mRNA.BJAM.scaffold3407.13768GAMMA GLUTAMYL TRANSPEPTIDASE
mRNA.BJAM.scaffold3409.13769POLYSERASE-RELATED
mRNA.BJAM.scaffold341.2591
mRNA.BJAM.scaffold341.2592
mRNA.BJAM.scaffold341.2593
mRNA.BJAM.scaffold3410.13770
mRNA.BJAM.scaffold3410.13771
mRNA.BJAM.scaffold3411.13772SIDESTEP PROTEIN
mRNA.BJAM.scaffold3411.13773ZINC FINGER PROTEIN
mRNA.BJAM.scaffold3413.13774BEAT PROTEIN
mRNA.BJAM.scaffold3414.13775
mRNA.BJAM.scaffold3414.13776
mRNA.BJAM.scaffold3414.13777CYPHER, ISOFORM B
mRNA.BJAM.scaffold3414.13778DUMPY: SHORTER THAN WILD-TYPE
mRNA.BJAM.scaffold3414.13779UNCHARACTERIZED
mRNA.BJAM.scaffold3414.13780
mRNA.BJAM.scaffold3414.13781DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER
mRNA.BJAM.scaffold3415.13782
mRNA.BJAM.scaffold3415.13783
mRNA.BJAM.scaffold3416.13784
mRNA.BJAM.scaffold3416.13785
mRNA.BJAM.scaffold3416.13786CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
mRNA.BJAM.scaffold3416.13787PROTEIN STAR
mRNA.BJAM.scaffold3418.13788CYTOCHROME B5-RELATED PROTEIN-RELATED
mRNA.BJAM.scaffold3419.13789COLLAGEN ALPHA
mRNA.BJAM.scaffold3419.13790COLLAGEN ALPHA
mRNA.BJAM.scaffold3419.13791
mRNA.BJAM.scaffold342.2594POLYSERASE-RELATED
mRNA.BJAM.scaffold3420.13792BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
mRNA.BJAM.scaffold3422.13793ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4
mRNA.BJAM.scaffold3422.13794BC025462 PROTEIN
mRNA.BJAM.scaffold3422.13795INHIBITOR OF GROWTH PROTEIN
mRNA.BJAM.scaffold3426.13796FORKHEAD BOX PROTEIN
mRNA.BJAM.scaffold3426.13797FORKHEAD BOX PROTEIN
mRNA.BJAM.scaffold3426.13798COBW-RELATED
mRNA.BJAM.scaffold3426.13799CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1
mRNA.BJAM.scaffold3426.13800ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
mRNA.BJAM.scaffold3427.13801ENOLASE SUPERFAMILY, MANDELATE RACEMASE
mRNA.BJAM.scaffold3427.13802TETRASPANIN
mRNA.BJAM.scaffold3427.13803RIBOSOMAL PROTEIN L30
mRNA.BJAM.scaffold3427.13804CYSTATHIONINE BETA-SYNTHASE
mRNA.BJAM.scaffold3427.13805LONG-CHAIN-FATTY-ACID--COA LIGASE
mRNA.BJAM.scaffold3427.13806RING FINGER PROTEIN 37
mRNA.BJAM.scaffold3427.13807
mRNA.BJAM.scaffold343.2595CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
mRNA.BJAM.scaffold343.2596CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
mRNA.BJAM.scaffold343.2597
mRNA.BJAM.scaffold343.2598CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED
mRNA.BJAM.scaffold343.2599DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
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