About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold343.2600SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F
mRNA.BJAM.scaffold343.2601
mRNA.BJAM.scaffold343.2602
mRNA.BJAM.scaffold343.2603
mRNA.BJAM.scaffold343.2604FI23527P1
mRNA.BJAM.scaffold343.2605RAB FAMILY
mRNA.BJAM.scaffold343.2606LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL
mRNA.BJAM.scaffold343.2607
mRNA.BJAM.scaffold343.2608
mRNA.BJAM.scaffold343.2609
mRNA.BJAM.scaffold343.2610F-BOX/TPR REPEAT PROTEIN POF3
mRNA.BJAM.scaffold343.2611FAS-ASSOCIATED PROTEIN
mRNA.BJAM.scaffold343.2612MITOCHONDRIA-EATING PROTEIN-RELATED
mRNA.BJAM.scaffold3433.13808
mRNA.BJAM.scaffold3433.13809
mRNA.BJAM.scaffold3433.13810
mRNA.BJAM.scaffold3433.13811HISTONE ACETYLTRANSFERASE
mRNA.BJAM.scaffold3433.13812
mRNA.BJAM.scaffold3433.13813
mRNA.BJAM.scaffold3433.13814PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN
mRNA.BJAM.scaffold3434.13815
mRNA.BJAM.scaffold3435.13816
mRNA.BJAM.scaffold3436.13817
mRNA.BJAM.scaffold3436.13818
mRNA.BJAM.scaffold3436.13819
mRNA.BJAM.scaffold3436.13820BETA-1,4-GALACTOSYLTRANSFERASE
mRNA.BJAM.scaffold3436.13821NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT
mRNA.BJAM.scaffold3436.13822KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG
mRNA.BJAM.scaffold3436.13823-
mRNA.BJAM.scaffold3436.13824CHARGED MULTIVESICULAR BODY PROTEIN
mRNA.BJAM.scaffold3436.13825
mRNA.BJAM.scaffold3438.13826
mRNA.BJAM.scaffold3438.13827LARVAL STORAGE PROTEIN/PHENOLOXIDASE
mRNA.BJAM.scaffold3438.13828LARVAL STORAGE PROTEIN/PHENOLOXIDASE
mRNA.BJAM.scaffold3438.13829LARVAL STORAGE PROTEIN/PHENOLOXIDASE
mRNA.BJAM.scaffold3438.13830LARVAL STORAGE PROTEIN/PHENOLOXIDASE
mRNA.BJAM.scaffold3438.13831LARVAL STORAGE PROTEIN/PHENOLOXIDASE
mRNA.BJAM.scaffold344.2613
mRNA.BJAM.scaffold344.2614CXC DOMAIN-CONTAINING PROTEIN-RELATED
mRNA.BJAM.scaffold344.2615
mRNA.BJAM.scaffold3442.13832MYC PROTO-ONCOGENE
mRNA.BJAM.scaffold3442.13833COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30
mRNA.BJAM.scaffold3442.13834
mRNA.BJAM.scaffold3442.13835
mRNA.BJAM.scaffold3442.13836CDC45-RELATED PROTEIN
mRNA.BJAM.scaffold3442.13837
mRNA.BJAM.scaffold3442.13838
mRNA.BJAM.scaffold3443.13839
mRNA.BJAM.scaffold3443.13840TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN
mRNA.BJAM.scaffold3443.13841SERINE PROTEASE INHIBITOR, SERPIN
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