Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s050.g0031.t1 | LORICRIN |
Lsat_s050.g0032.t1 | LORICRIN |
Lsat_s050.g0033.t1 | USP DOMAIN-CONTAINING PROTEIN |
Lsat_s050.g0034.t1 | |
Lsat_s050.g0035.t1 | |
Lsat_s050.g0036.t1 | |
Lsat_s050.g0037.t1 | |
Lsat_s050.g0038.t1 | NUCLEOPLASMIN |
Lsat_s050.g0039.t1 | SODIUM-BILE ACID COTRANSPORTER |
Lsat_s050.g0040.t1 | |
Lsat_s050.g0041.t1 | PROTEIN FOLDING REGULATOR |
Lsat_s050.g0042.t1 | TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2 |
Lsat_s050.g0043.t1 | |
Lsat_s050.g0044.t1 | |
Lsat_s050.g0045.t1 | SIGNAL RECOGNITION PARTICLE 72 |
Lsat_s050.g0046.t1 | INWARD RECTIFIER POTASSIUM CHANNEL |
Lsat_s050.g0047.t1 | INWARD RECTIFIER POTASSIUM CHANNEL |
Lsat_s050.g0048.t1 | SIDEROFLEXIN |
Lsat_s050.g0049.t1 | TRANSMEMBRANE PROTEIN 128 |
Lsat_s050.g0050.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
Lsat_s050.g0051.t1 | |
Lsat_s050.g0052.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
Lsat_s050.g0053.t1 | |
Lsat_s050.g0054.t1 | |
Lsat_s050.g0055.t1 | PEPTIDASE |
Lsat_s050.g0056.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
Lsat_s050.g0057.t1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
Lsat_s050.g0058.t1 | 12 KDA HEAT SHOCK PROTEIN |
Lsat_s050.g0059.t1 | USP DOMAIN-CONTAINING PROTEIN |
Lsat_s050.g0060.t1 | MYOSIN LIGHT CHAIN 1, 3 |
Lsat_s050.g0061.t1 | MYOSIN LIGHT CHAIN 1, 3 |
Lsat_s050.g0062.t1 | |
Lsat_s050.g0063.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
Lsat_s050.g0064.t1 | EXPORTIN 4,7-RELATED |
Lsat_s050.g0065.t1 | EXPORTIN 4,7-RELATED |
Lsat_s050.g0066.t1 | AMINO ACID TRANSPORTER |
Lsat_s050.g0067.t1 | TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN |
Lsat_s050.g0068.t1 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 |
Lsat_s050.g0069.t1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
Lsat_s050.g0070.t1 | UNCHARACTERIZED |
Lsat_s050.g0071.t1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Lsat_s050.g0072.t1 | FATTY ACID SYNTHASE |
Lsat_s050.g0073.t1 | 3-5 EXONUCLEASE |
Lsat_s050.g0074.t1 | 3-5 EXONUCLEASE |
Lsat_s050.g0075.t1 | 28S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL |
Lsat_s050.g0076.t1 | UNCHARACTERIZED |
Lsat_s050.g0077.t1 | UNCHARACTERIZED |
Lsat_s050.g0078.t1 | |
Lsat_s050.g0079.t1 | |
Lsat_s050.g0080.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |