About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

<< First 407 408 409 410 411 412 413 414 415 416 Forward> Last>>        661 pages in total

Gene IDDescription
ENSZWYP00000020602.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
ENSZWYP00000020603.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
ENSZWYP00000020604.1PROTEIN CBG12474
ENSZWYP00000020605.1CYTOKINE RECEPTOR
ENSZWYP00000020606.1
ENSZWYP00000020607.1CYTOKINE RECEPTOR
ENSZWYP00000020608.1
ENSZWYP00000020609.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
ENSZWYP00000020610.128S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL
ENSZWYP00000020611.1
ENSZWYP00000020612.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
ENSZWYP00000020613.1UNCHARACTERIZED
ENSZWYP00000020614.1CALCIUM BINDING PROTEIN
ENSZWYP00000020615.1CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
ENSZWYP00000020616.1
ENSZWYP00000020617.1
ENSZWYP00000020618.1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
ENSZWYP00000020619.1UNCHARACTERIZED
ENSZWYP00000020620.1MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE
ENSZWYP00000020621.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
ENSZWYP00000020622.1
ENSZWYP00000020623.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
ENSZWYP00000020624.1CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2
ENSZWYP00000020625.1AXIN
ENSZWYP00000020626.1ATP-DEPENDENT RNA HELICASE
ENSZWYP00000020627.1CALCIUM BINDING PROTEIN
ENSZWYP00000020628.1CYTOCHROME C OXIDASE SUBUNIT VIIC
ENSZWYP00000020629.1MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE
ENSZWYP00000020630.1
ENSZWYP00000020631.1
ENSZWYP00000020632.1BA1-643
ENSZWYP00000020633.1
ENSZWYP00000020634.1METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE
ENSZWYP00000020635.1PROTEIN ZWILCH HOMOLOG
ENSZWYP00000020636.1SEROTONIN N-ACETYLTRANSFERASE
ENSZWYP00000020637.1
ENSZWYP00000020638.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020639.1ARSENITE METHYLTRANSFERASE
ENSZWYP00000020640.1
ENSZWYP00000020641.1
ENSZWYP00000020642.1PROTEIN ZWILCH HOMOLOG
ENSZWYP00000020643.1NADPH OXIDASE
ENSZWYP00000020644.1
ENSZWYP00000020645.1SEROTONIN N-ACETYLTRANSFERASE
ENSZWYP00000020646.1SLD5 PROTEIN
ENSZWYP00000020647.1
ENSZWYP00000020648.1CYTOCHROME C OXIDASE SUBUNIT 6C
ENSZWYP00000020649.1TRANSFERASE, PUTATIVE-RELATED
ENSZWYP00000020650.1ARSENITE METHYLTRANSFERASE
ENSZWYP00000020651.1
TOP