About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000020552.1FTP DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020553.1
ENSZWYP00000020554.1COLLAGEN ALPHA
ENSZWYP00000020555.1ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
ENSZWYP00000020556.1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
ENSZWYP00000020557.1M-AAA PROTEASE-INTERACTING PROTEIN 1, MITOCHONDRIAL
ENSZWYP00000020558.1
ENSZWYP00000020559.1
ENSZWYP00000020560.1NUCLEAR FACTOR I
ENSZWYP00000020561.1CYTOKINE RECEPTOR
ENSZWYP00000020562.1
ENSZWYP00000020563.1FI19922P1-RELATED
ENSZWYP00000020564.1ALPHA-GLUCOSIDASE
ENSZWYP00000020565.1FTP DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020566.1
ENSZWYP00000020567.1
ENSZWYP00000020568.1NUCLEAR FACTOR I
ENSZWYP00000020569.1COLLAGEN ALPHA
ENSZWYP00000020570.1DNA POLYMERASE TYPE-X FAMILY MEMBER
ENSZWYP00000020571.1NANOS PROTEIN
ENSZWYP00000020572.1
ENSZWYP00000020573.1CYTOKINE RECEPTOR
ENSZWYP00000020574.1
ENSZWYP00000020575.1GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
ENSZWYP00000020576.1
ENSZWYP00000020577.1DNA POLYMERASE TYPE-X FAMILY MEMBER
ENSZWYP00000020578.1INTEGRAL MEMBRANE PROTEIN GPR177
ENSZWYP00000020579.1
ENSZWYP00000020580.1
ENSZWYP00000020581.1
ENSZWYP00000020582.1ALPHA-GLUCOSIDASE
ENSZWYP00000020583.1FTP DOMAIN-CONTAINING PROTEIN
ENSZWYP00000020584.1NOP14
ENSZWYP00000020585.1
ENSZWYP00000020586.1
ENSZWYP00000020587.1CYTOKINE RECEPTOR
ENSZWYP00000020588.1
ENSZWYP00000020589.1MITOCHONDRIA-EATING PROTEIN-RELATED
ENSZWYP00000020590.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
ENSZWYP00000020591.1
ENSZWYP00000020592.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
ENSZWYP00000020593.1DNA POLYMERASE TYPE-X FAMILY MEMBER
ENSZWYP00000020594.1
ENSZWYP00000020595.1INTEGRAL MEMBRANE PROTEIN GPR177
ENSZWYP00000020596.1APYRASE
ENSZWYP00000020597.1
ENSZWYP00000020598.1
ENSZWYP00000020599.1MITOCHONDRIA-EATING PROTEIN-RELATED
ENSZWYP00000020600.1XYLOSYLTRANSFERASE OXT
ENSZWYP00000020601.1
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