About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02288.1
RPACG02289.1
RPACG02290.1SPERM PROTEIN HOMOLOG
RPACG02291.1SPERM PROTEIN HOMOLOG
RPACG02292.1SPLICING FACTOR 3B, SUBUNIT 1-RELATED
RPACG02293.1
RPACG02294.1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
RPACG02295.1
RPACG02296.1
RPACG02297.1PROTEIN CBG20215-RELATED
RPACG02297.2
RPACG02298.1
RPACG02299.1
RPACG02300.1
RPACG02301.1
RPACG02302.1
RPACG02303.1
RPACG02304.1
RPACG02305.1
RPACG02306.1
RPACG02306.2
RPACG02307.1
RPACG02307.2
RPACG02307.3
RPACG02307.4
RPACG02307.5
RPACG02308.1
RPACG02309.1
RPACG02310.1
RPACG02311.1
RPACG02312.1
RPACG02312.2
RPACG02313.1
RPACG02314.1
RPACG02314.2
RPACG02315.1
RPACG02316.1MUCIN 4-RELATED
RPACG02317.1TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR
RPACG02318.1CARBOHYDRATE SULFOTRANSFERASE
RPACG02319.1
RPACG02320.1SHORT COILED COIL PROTEIN
RPACG02320.2
RPACG02320.3
RPACG02321.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5
RPACG02322.1PROTEIN UNC-50 HOMOLOG
RPACG02323.1IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
RPACG02324.1RAB FAMILY
RPACG02325.1AARF DOMAIN CONTAINING KINASE 2 (PREDICTED)
RPACG02326.1DNA-DIRECTED RNA POLYMERASE I,II,III
RPACG02327.1SNARE PROTEINS
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