About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02243.1-
RPACG02244.1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
RPACG02244.2
RPACG02245.1
RPACG02246.1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
RPACG02247.1INTEGRIN ALPHA
RPACG02248.1
RPACG02249.1MY011 PROTEIN
RPACG02250.1UPF0565 PROTEIN C2ORF69
RPACG02251.1
RPACG02252.1
RPACG02253.1-
RPACG02253.2
RPACG02254.1
RPACG02255.1
RPACG02256.1
RPACG02257.1APOLIPOPROTEIN B
RPACG02258.1-
RPACG02259.12-5 OLIGOADENYLATE SYNTHETASE
RPACG02260.1
RPACG02261.1
RPACG02262.1
RPACG02263.1
RPACG02264.1
RPACG02265.1MUCIN 4-RELATED
RPACG02266.1
RPACG02267.1
RPACG02268.1
RPACG02269.1
RPACG02269.2
RPACG02270.1PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
RPACG02271.1GUANYLYL CYCLASE
RPACG02272.1GUANYLYL CYCLASE
RPACG02273.1PHOSPHATE-BINDING PROTEIN PSTS
RPACG02274.1GUANYLYL CYCLASE
RPACG02274.2
RPACG02275.1GUANYLYL CYCLASE
RPACG02276.1
RPACG02277.1GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
RPACG02278.1UNCHARACTERIZED
RPACG02278.2
RPACG02279.1-
RPACG02280.1RNA BINDING PROTEIN
RPACG02281.1
RPACG02282.1
RPACG02283.1
RPACG02284.1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
RPACG02285.1
RPACG02286.1
RPACG02287.1
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