About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02328.1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
RPACG02329.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
RPACG02330.1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
RPACG02330.2
RPACG02331.1
RPACG02332.1
RPACG02333.1
RPACG02334.1GEM-ASSOCIATED PROTEIN 5
RPACG02335.1GEM-ASSOCIATED PROTEIN 5
RPACG02335.2
RPACG02336.1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
RPACG02337.1
RPACG02338.1
RPACG02339.1
RPACG02340.1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
RPACG02340.2
RPACG02341.1
RPACG02342.1
RPACG02343.1TOLL-LIKE RECEPTOR
RPACG02344.1
RPACG02345.1
RPACG02346.1
RPACG02347.1
RPACG02348.1
RPACG02349.1
RPACG02350.139S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
RPACG02351.1TETRATRICOPEPTIDE REPEAT PROTEIN 6
RPACG02352.1
RPACG02353.1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
RPACG02354.1
RPACG02355.1-
RPACG02355.2
RPACG02355.3
RPACG02355.4
RPACG02355.5
RPACG02356.1
RPACG02356.2
RPACG02357.1ZINC FINGER PROTEIN 142
RPACG02358.1
RPACG02359.1
RPACG02360.1
RPACG02361.1
RPACG02362.1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
RPACG02363.1MATRIX PROTEIN, PUTATIVE-RELATED
RPACG02364.1PHOSPHOGLYCERATE KINASE
RPACG02364.2
RPACG02365.1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
RPACG02366.1HL07962P-RELATED
RPACG02367.1
RPACG02368.1
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