Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12473 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12474 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12475 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12476 | |
Clavulariidae_g12477 | |
Clavulariidae_g12478 | PROTEIN CBG23764 |
Clavulariidae_g12479 | COLLAGEN ALPHA |
Clavulariidae_g1248 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
Clavulariidae_g12480 | |
Clavulariidae_g12481 | PROTEIN CBG26694 |
Clavulariidae_g12482 | PROTEIN CBG26694 |
Clavulariidae_g12483 | PROTEIN CBG26694 |
Clavulariidae_g12484 | PROTEIN CBG26694 |
Clavulariidae_g12485 | ANTHRAX TOXIN RECEPTOR |
Clavulariidae_g12486 | |
Clavulariidae_g12487 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12488 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12489 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g1249 | |
Clavulariidae_g12490 | |
Clavulariidae_g12491 | |
Clavulariidae_g12492 | ZGC:195170 |
Clavulariidae_g12493 | |
Clavulariidae_g12494 | |
Clavulariidae_g12495 | OS02G0260700 PROTEIN |
Clavulariidae_g12496 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
Clavulariidae_g12497 | ANTHRAX TOXIN RECEPTOR |
Clavulariidae_g12498 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12499 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
Clavulariidae_g125 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1250 | RETROTRANSPOSON |
Clavulariidae_g12500 | |
Clavulariidae_g12501 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12502 | RAPSYN-RELATED |
Clavulariidae_g12503 | |
Clavulariidae_g12504 | |
Clavulariidae_g12505 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
Clavulariidae_g12506 | TYROSINE-PROTEIN KINASE RECEPTOR |
Clavulariidae_g12507 | TRANSPOSASE |
Clavulariidae_g12508 | |
Clavulariidae_g12509 | |
Clavulariidae_g1251 | RETROTRANSPOSON |
Clavulariidae_g12510 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12511 | BONUS, ISOFORM C-RELATED |
Clavulariidae_g12512 | IONOTROPIC GLUTAMATE RECEPTOR |
Clavulariidae_g12513 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
Clavulariidae_g12514 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
Clavulariidae_g12515 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12516 | RETROTRANSPOSON |
Clavulariidae_g12517 | PROTEIN CBG26694 |