About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12338
Clavulariidae_g12339REVERSE TRANSCRIPTASES
Clavulariidae_g1234
Clavulariidae_g12340SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g12341
Clavulariidae_g12342
Clavulariidae_g12343
Clavulariidae_g12344REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12345
Clavulariidae_g12346
Clavulariidae_g12347
Clavulariidae_g12348REVERSE TRANSCRIPTASES
Clavulariidae_g12349ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1235STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Clavulariidae_g12350
Clavulariidae_g12351RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12352
Clavulariidae_g12353POL PROTEIN
Clavulariidae_g12354
Clavulariidae_g12355REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12356POL PROTEIN
Clavulariidae_g12357MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Clavulariidae_g12358
Clavulariidae_g12359
Clavulariidae_g1236
Clavulariidae_g12360
Clavulariidae_g12361
Clavulariidae_g12362REVERSE TRANSCRIPTASE
Clavulariidae_g12363
Clavulariidae_g12364
Clavulariidae_g12365
Clavulariidae_g12366ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Clavulariidae_g12367PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12368
Clavulariidae_g12369
Clavulariidae_g1237SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g12370
Clavulariidae_g12371
Clavulariidae_g12372CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12373PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12374
Clavulariidae_g12375REVERSE TRANSCRIPTASES
Clavulariidae_g12376RETROTRANSPOSON
Clavulariidae_g12377REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12378ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12379ANKYRIN REPEAT FAMILY PROTEIN
Clavulariidae_g1238
Clavulariidae_g12380
Clavulariidae_g12381MYOTROPHIN
Clavulariidae_g12382
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