About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_16360-0.16SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL
Bpl_scaf_16360-0.17
Bpl_scaf_16360-0.26AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Bpl_scaf_1637-0.4
Bpl_scaf_1637-0.5F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
Bpl_scaf_16370-0.13MIRROR-IMAGE POLYDACTYLY GENE 1 PROTEIN
Bpl_scaf_16370-0.28AGAP008810-PA
Bpl_scaf_16370-0.29VITELLOGENIN-RELATED
Bpl_scaf_16370-0.7FORKHEAD BOX PROTEIN
Bpl_scaf_16370-0.9AGAP008810-PA
Bpl_scaf_16371-0.14COLLAGEN ALPHA
Bpl_scaf_16371-0.16COLLAGEN ALPHA
Bpl_scaf_16381-0.4-
Bpl_scaf_16381-1.5ACETYL-COENZYME A SYNTHETASE
Bpl_scaf_16381-1.6RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Bpl_scaf_16381-1.7SERINE-THREONINE PROTEIN KINASE
Bpl_scaf_16392-1.12PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
Bpl_scaf_16392-1.26AGAP008228-PA
Bpl_scaf_16392-1.5CCAAT/ENHANCER BINDING PROTEIN
Bpl_scaf_16392-1.8CCAAT/ENHANCER BINDING PROTEIN
Bpl_scaf_16398-0.14TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_16398-1.16
Bpl_scaf_16398-1.17
Bpl_scaf_16398-1.19IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_16398-1.20
Bpl_scaf_16398-1.4
Bpl_scaf_16407-0.3
Bpl_scaf_16407-1.1
Bpl_scaf_16407-1.12RASSF
Bpl_scaf_16407-1.54PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_16407-1.55PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_16407-1.8
Bpl_scaf_16417-0.10
Bpl_scaf_16417-0.11
Bpl_scaf_16417-1.1
Bpl_scaf_16417-1.11
Bpl_scaf_16417-1.14
Bpl_scaf_16417-1.15
Bpl_scaf_16417-1.6
Bpl_scaf_16428-1.2
Bpl_scaf_16441-0.6
Bpl_scaf_16441-1.11LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_16441-1.21INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_16441-1.22INTERFERON-INDUCIBLE GTPASE
Bpl_scaf_16441-1.23GLYCOPROTEIN HORMONE RECEPTOR
Bpl_scaf_16441-1.25
Bpl_scaf_16451-0.2
Bpl_scaf_16451-0.4VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Bpl_scaf_16451-0.7VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Bpl_scaf_16451-1.27
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