Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_15846-0.2 | |
| Bpl_scaf_15846-1.1 | |
| Bpl_scaf_15846-1.2 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_15846-1.7 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_15846-2.25 | RP42 RELATED |
| Bpl_scaf_15846-2.31 | PROTEIN PHOSPHATASE 2C |
| Bpl_scaf_15846-2.32 | LYR MOTIF-CONTAINING PROTEIN 1 |
| Bpl_scaf_15846-2.4 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_15846-2.7 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_15846-2.8 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_15847-0.1 | |
| Bpl_scaf_15848-0.0 | |
| Bpl_scaf_15848-0.7 | |
| Bpl_scaf_15853-0.3 | MAESTRO-RELATED HEAT DOMAIN-CONTAINING |
| Bpl_scaf_15856-0.16 | |
| Bpl_scaf_15856-0.18 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_15856-0.19 | PROTEIN TORNADO 1 |
| Bpl_scaf_15856-0.20 | TETRATRICOPEPTIDE REPEAT PROTEIN 22 |
| Bpl_scaf_15856-1.10 | HYPOTHETICAL PROTEIN LOC691189 |
| Bpl_scaf_15856-1.11 | POLY A POLYMERASE CID PAP -RELATED |
| Bpl_scaf_15856-1.9 | POLY A POLYMERASE CID PAP -RELATED |
| Bpl_scaf_15856-2.1 | |
| Bpl_scaf_15856-2.14 | |
| Bpl_scaf_15856-2.21 | |
| Bpl_scaf_15860-0.5 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_15860-0.6 | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN |
| Bpl_scaf_15860-1.0 | RBPJ-INTERACTING AND TUBULIN-ASSOCIATED PROTEIN 1 |
| Bpl_scaf_15860-1.7 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_15860-1.8 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_15860-1.9 | RETINOVIN-RELATED |
| Bpl_scaf_15860-2.2 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_15860-2.5 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_15860-2.7 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_15945-0.10 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Bpl_scaf_15945-0.21 | AROMATIC AMINO ACID HYDROXYLASE |
| Bpl_scaf_15945-0.9 | PEPTIDASE M20 |
| Bpl_scaf_15947-0.0 | |
| Bpl_scaf_15948-0.12 | FAT ATYPICAL CADHERIN-RELATED |
| Bpl_scaf_15949-0.2 | CYCLINS |
| Bpl_scaf_15950-0.4 | DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN |
| Bpl_scaf_15951-0.6 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_15951-1.2 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_15951-1.4 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_15951-10.18 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| Bpl_scaf_15951-10.19 | SERINE-THREONINE PROTEIN KINASE |
| Bpl_scaf_15951-10.20 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_15951-10.21 | CHROMOSOME 8 OPEN READING FRAME 48 |
| Bpl_scaf_15951-10.22 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_15951-10.36 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_15951-10.38 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
