Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_15951-10.47 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_15951-2.13 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Bpl_scaf_15951-2.14 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
| Bpl_scaf_15951-2.5 | CALPAIN |
| Bpl_scaf_15951-3.16 | CARRIER DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_15951-3.23 | VERY-LONG-CHAIN 3-OXOOACYL-COA REDUCTASE |
| Bpl_scaf_15951-3.24 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 |
| Bpl_scaf_15951-4.7 | SHORT COILED COIL PROTEIN |
| Bpl_scaf_15951-4.8 | HSC70CB, ISOFORM G-RELATED |
| Bpl_scaf_15951-4.9 | SERINE/THREONINE-PROTEIN KINASE PLK |
| Bpl_scaf_15951-5.5 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Bpl_scaf_15951-5.6 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Bpl_scaf_15951-6.2 | PROTEIN FAM181B |
| Bpl_scaf_15951-7.2 | |
| Bpl_scaf_15951-7.8 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| Bpl_scaf_15951-7.9 | PROGESTERONE-INDUCED BLOCKING FACTOR 1 |
| Bpl_scaf_15951-8.4 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| Bpl_scaf_15951-9.10 | SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_15951-9.6 | UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN |
| Bpl_scaf_15951-9.9 | |
| Bpl_scaf_15952-0.1 | RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED |
| Bpl_scaf_15953-0.0 | |
| Bpl_scaf_15953-0.3 | |
| Bpl_scaf_15957-0.5 | |
| Bpl_scaf_15960-0.3 | PLAT DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_15960-1.0 | |
| Bpl_scaf_15960-1.1 | |
| Bpl_scaf_15960-1.6 | |
| Bpl_scaf_15960-2.0 | |
| Bpl_scaf_15960-2.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_15962-0.0 | |
| Bpl_scaf_15971-1.4 | FIBRINOGEN ALPHA CHAIN |
| Bpl_scaf_15971-1.7 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_15971-2.10 | |
| Bpl_scaf_15971-2.8 | |
| Bpl_scaf_15971-3.0 | |
| Bpl_scaf_15972-0.0 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_15973-0.3 | TPR REPEAT CONTAINING PROTEIN |
| Bpl_scaf_15974-0.2 | EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER |
| Bpl_scaf_15974-0.7 | CEREBELLIN-RELATED |
| Bpl_scaf_15975-0.0 | |
| Bpl_scaf_15977-0.2 | |
| Bpl_scaf_15980-0.4 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
| Bpl_scaf_15982-0.8 | |
| Bpl_scaf_15982-1.0 | INHIBITOR OF APOPTOSIS |
| Bpl_scaf_15982-1.10 | RAGULATOR COMPLEX PROTEIN LAMTOR1 |
| Bpl_scaf_15982-1.5 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| Bpl_scaf_15982-1.8 | |
| Bpl_scaf_15982-2.19 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| Bpl_scaf_15982-2.8 | UNCHARACTERIZED |
