About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_035274-T1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A
LLU|FUN_035275-T1
LLU|FUN_035276-T1
LLU|FUN_035277-T1
LLU|FUN_035278-T1
LLU|FUN_035279-T1EH DOMAIN
LLU|FUN_035280-T1GAF/PUTATIVE CYTOSKELETAL PROTEIN
LLU|FUN_035281-T1
LLU|FUN_035282-T1
LLU|FUN_035283-T1
LLU|FUN_035284-T1
LLU|FUN_035285-T1
LLU|FUN_035286-T1
LLU|FUN_035287-T1SOLUTE CARRIER FAMILY 40 MEMBER
LLU|FUN_035288-T1
LLU|FUN_035289-T1GTP CYCLOHYDROLASE I
LLU|FUN_035290-T1
LLU|FUN_035291-T1GTP CYCLOHYDROLASE I
LLU|FUN_035292-T1
LLU|FUN_035293-T1
LLU|FUN_035294-T1
LLU|FUN_035295-T1
LLU|FUN_035296-T1
LLU|FUN_035297-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_035298-T1
LLU|FUN_035299-T1
LLU|FUN_035300-T1ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1
LLU|FUN_035301-T1MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED
LLU|FUN_035302-T1NEPHRIN
LLU|FUN_035303-T1O-ACYLTRANSFERASE
LLU|FUN_035304-T1CRUMBS FAMILY MEMBER
LLU|FUN_035305-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_035306-T1AMMONIUM TRANSPORTER
LLU|FUN_035307-T1
LLU|FUN_035308-T1RHO FAMILY GTPASE
LLU|FUN_035309-T1V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A
LLU|FUN_035310-T1N-ALPHA-ACETYLTRANSFERASE
LLU|FUN_035311-T1
LLU|FUN_035312-T1
LLU|FUN_035313-T1
LLU|FUN_035314-T1
LLU|FUN_035315-T1
LLU|FUN_035316-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
LLU|FUN_035317-T1RFX TRANSCRIPTION FACTOR FAMILY
LLU|FUN_035318-T1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
LLU|FUN_035319-T1
LLU|FUN_035320-T1
LLU|FUN_035321-T1
LLU|FUN_035322-T1
LLU|FUN_035323-T1
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