About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21485ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21486ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides21487TRANSPOSON
Paelopatides21488-
Paelopatides21489PARANEOPLASTIC ANTIGEN
Paelopatides21490PROTEIN CBG26694
Paelopatides21491NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides21492-
Paelopatides21493TRANSPOSON
Paelopatides21494UPF0722 PROTEIN C11ORF88
Paelopatides21495-
Paelopatides21496-
Paelopatides21497DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides21498APOLIPOPROTEIN L
Paelopatides21499PROTEIN CBG26694
Paelopatides21500HISTONE H3
Paelopatides21501HISTONE H4
Paelopatides21502HISTONE H2B
Paelopatides21503L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides21504PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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