About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21505REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21506PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides21507PROTEIN ENHANCER OF SEVENLESS 2B
Paelopatides21508TRANSPOSON
Paelopatides21509-
Paelopatides21510PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
Paelopatides21512-
Paelopatides21513-
Paelopatides21514-
Paelopatides21515PROTEIN CBG26694
Paelopatides21516SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Paelopatides21517SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Paelopatides21518DYNEIN HEAVY CHAIN
Paelopatides21519-
Paelopatides21520-
Paelopatides21521FRIZZLED
Paelopatides21522DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
Paelopatides21523GLYCOPROTEIN-RELATED
Paelopatides21524-
Paelopatides21525HEMOPEXIN DOMAIN-CONTAINING PROTEIN
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