About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21549FOIE GRAS
Paelopatides21550ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2
Paelopatides21551RIBOSOMAL PROTEIN S6 KINASE
Paelopatides21552WD40 REPEAT PROTEIN
Paelopatides21553SEPTIN
Paelopatides21554HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
Paelopatides21555RETROTRANSPOSON
Paelopatides21556PROTEIN CBG26694
Paelopatides21557ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides21558-
Paelopatides21559REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21560-
Paelopatides21561-
Paelopatides21563B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides21564-
Paelopatides21565-
Paelopatides21566-
Paelopatides21567NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides21568PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides21569PROTEIN CBG26694
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