About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23170ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23171MACROGLOBULIN / COMPLEMENT
Paelopatides23172PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides23173PROTEIN CBG17025
Paelopatides23174MACROGLOBULIN / COMPLEMENT
Paelopatides23175MACROGLOBULIN / COMPLEMENT
Paelopatides23176-
Paelopatides23177REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23178REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23179-
Paelopatides23180TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides23181-
Paelopatides23182TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides23183TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides23184-
Paelopatides23186SOLUTE CARRIER FAMILY 5
Paelopatides23187SOLUTE CARRIER FAMILY 5
Paelopatides23188-
Paelopatides23189TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides23190PNAS-3 RELATED
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