About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23234PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides23235-
Paelopatides23236PERICENTRIOLAR MATERIAL 1-RELATED
Paelopatides23237PROTEIN CBG26694
Paelopatides23238ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23239ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23240-
Paelopatides23241-
Paelopatides23242ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides23243PROTEIN CBG26694
Paelopatides23244-
Paelopatides23245NETRIN RECEPTOR UNC5
Paelopatides23246-
Paelopatides23247MALATE DEHYDROGENASE
Paelopatides23248SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
Paelopatides23249ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23251ENZYMATIC POLYPROTEIN-RELATED
Paelopatides23252LP04239P
Paelopatides23254-
Paelopatides23255REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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